Basic Information
VIS ID
TVIS10005287
Fusion event
HBV-chr4 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
2660
Orient
-
Integrated sequence
GGAGGACATTATTAATAGATGTCAACAATATGTGGGCCCTCTTACAGTTAATGAAAAAAGGAGATTAAAATTAATTATGCCTGCTAGGTTCTATCCTAAC| |CTTACCAAATATTTGCCCTTGGATAAAGGCATTAAACCTTATTATCCTGAACATGCAGTTAATCATTACTTCAAAACTAGGCATTATTTACATACTCTGT
Host Sequence
Chromosome
chr4
Cytoband
q24
Reference genome
GRCh37/hg19
Start
105772411/104851254 (Hg38)
End
105772411/104851254 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/3520840; hsa-mir-1243/Downstream/4637444;
Nearest TSS
ENST00000502981/Upstream/294294; ENST00000515649/Downstream/56103;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1131614, chr4-CpG: 88/Downstream/294785
Upstream sequence
TTATTTATCACATAAAACTGAGACGATTCTCCGTCATTTTGTAACATTATAAATTCAGACTTTCAGGGTCAGTTGGTGTCTTGGAAGATCTACTCTAAGA
Downstream sequence
cgggccaggcgtggtggctcatacctgaaataccagcactttgggaggccaaggcaggtggatcatttgagatcaggagttctagaccagcctggccaac
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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