Basic Information
VIS ID
TVIS10005309
Fusion event
HBV-chr5 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1801
Orient
+
Integrated sequence
CATACTTCAAAGACTGTTTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTG| |TTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCA
Host Sequence
Chromosome
chr5
Cytoband
q32
Reference genome
End
148816994/149437431 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/6698; hsa-mir-103a-1/Downstream/295394;
Nearby gene
MIR143(-4595) ;
Nearest cancer related gene
MIR143(TSG, -4595) ;
Upstream sequence
TTCACTTTAAAGCCTAAGCATTGTATAATATTAAATAAGAGGAGGGGATGGGAGTGAAATGAGAATGGTATGAACAGAGGGAAATGAGAACACACCCAGA
Downstream sequence
TAAACGGGGCAGGGAGGGAAAGCAAATGTATTCCTCTTGTATACTTTTTTATATCTATATAAAGAAACCCAGGAAAAATACAAAAGGACCTAATAAAAGT
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
Curate