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VISDB
Viral Integration Site DataBase
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TVIS10005324
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10005324
Fusion event
HBV-ZNRF2 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1803
Orient
-
Integrated sequence
TACTTCAAAGACTGTTTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTT| |CACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATG
Host Sequence
Chromosome
chr7
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
30349321/30309705 (Hg38)
End
30349321/30309705 (Hg38)
Orient
-
Location type
Intron
Target gene
ZNRF2
miRNAs that regulate target gene
hsa-mir-103a-3p
;
hsa-mir-4328
;
hsa-mir-6868-5p
;
hsa-mir-3128
;
hsa-mir-4720-5p
;
hsa-mir-4799-3p
;
hsa-mir-5588-5p
;
hsa-mir-503-5p
;
hsa-mir-548c-3p
;
hsa-mir-4524a-5p
;
hsa-mir-4524b-5p
;
hsa-mir-15a-5p
;
hsa-mir-16-5p
;
hsa-mir-15b-5p
;
hsa-mir-195-5p
;
hsa-mir-424-5p
;
hsa-mir-486-5p
;
hsa-mir-497-5p
;
hsa-mir-4274
;
hsa-mir-4519
;
hsa-mir-6772-3p
;
hsa-mir-6838-5p
;
hsa-mir-5189-3p
;
hsa-mir-8054
;
hsa-mir-548l
;
hsa-mir-548k
;
hsa-mir-548av-5p
;
hsa-mir-559
;
hsa-mir-548y
;
hsa-mir-548w
;
hsa-mir-548o-5p
;
hsa-mir-548j-5p
;
hsa-mir-548i
;
hsa-mir-548h-5p
;
hsa-mir-548d-5p
;
hsa-mir-548c-5p
;
hsa-mir-548bb-5p
;
hsa-mir-548b-5p
;
hsa-mir-548ay-5p
;
hsa-mir-548au-5p
;
hsa-mir-548as-5p
;
hsa-mir-548ar-5p
;
hsa-mir-548aq-5p
;
hsa-mir-548ap-5p
;
hsa-mir-548am-5p
;
hsa-mir-548ak
;
hsa-mir-548ae-5p
;
hsa-mir-548ad-5p
;
hsa-mir-548ab
;
hsa-mir-548a-5p
;
hsa-mir-3191-5p
;
hsa-mir-4470
;
hsa-mir-6824-3p
;
hsa-mir-6764-3p
;
hsa-mir-330-5p
;
hsa-mir-326
;
hsa-mir-518c-5p
;
hsa-mir-3675-3p
;
hsa-mir-3973
;
hsa-mir-548al
;
hsa-mir-129-5p
;
hsa-mir-3680-3p
;
hsa-mir-557
;
hsa-mir-507
;
hsa-mir-450b-5p
;
hsa-mir-106a-3p
;
hsa-mir-6722-5p
;
hsa-mir-548x-5p
;
hsa-mir-548g-5p
;
hsa-mir-548f-5p
;
hsa-mir-548aj-5p
;
hsa-mir-1229-5p
;
hsa-mir-4314
;
hsa-mir-3132
;
hsa-mir-197-5p
;
hsa-mir-4448
;
hsa-mir-4268
;
hsa-mir-6776-5p
;
hsa-mir-6861-5p
;
hsa-mir-646
;
hsa-mir-548n
;
hsa-mir-100-5p
Nearest miRNA
hsa-mir-1183/Upstream/19815; hsa-mir-10399/Downstream/2423276;
Nearest TSS
ENST00000635602/Upstream/24131;
ENST00000628121/Downstream/52695;
Nearest CpG islands
None/Target,
chr7-CpG: 39/Upstream/23680
,
chr7-CpG: 68/Downstream/168666
Upstream sequence
tagctgccaacatttgacagttctaagattttctgtaaaaaccttgcttcccagcctctgcagaccagtcagaaggcctggctgcctggtctgcagcccc
Downstream sequence
ATTAAGCAGTACAGAAAGGTACCCGGTAATTTTTGTTTTGCATTGTTGTGATTCAGTTAAATGCTAAATTTTGCTGATCAGGAAAGTATAGATATGTAGC
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
Sample Information
×
Sample name
RK075_NT
Sample type
Nontumor
Age
62
Gender
Male
CpG Island Information
×
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