hsa-mir-4470 _LIHC.png
ZNRF2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10005324
Fusion event
HBV-ZNRF2 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1803
Orient
-
Integrated sequence
TACTTCAAAGACTGTTTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTT| |CACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATG
Host Sequence
Chromosome
chr7
Cytoband
p14.3
Reference genome
End
30349321/30309705 (Hg38)
Orient
-
Location type
Intron
Target gene
Nearest miRNA
hsa-mir-1183/Upstream/19815; hsa-mir-10399/Downstream/2423276;
Upstream sequence
tagctgccaacatttgacagttctaagattttctgtaaaaaccttgcttcccagcctctgcagaccagtcagaaggcctggctgcctggtctgcagcccc
Downstream sequence
ATTAAGCAGTACAGAAAGGTACCCGGTAATTTTTGTTTTGCATTGTTGTGATTCAGTTAAATGCTAAATTTTGCTGATCAGGAAAGTATAGATATGTAGC
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
Curate