Basic Information
VIS ID
TVIS10005346
Fusion event
HBV-LOC105371665 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1818
Orient
+
Integrated sequence
TTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCA| |ACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTAT
Host Sequence
Chromosome
chr1
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
192739984/192770854 (Hg38)
End
192739984/192770854 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1K
Target gene
LOC105371665
Nearest miRNA
hsa-mir-101-1/Upstream/54464; hsa-mir-1182/Downstream/365649;
Nearest TSS
ENST00000473358/Upstream/2320; ENST00000483295/Downstream/38185;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/6089905, chr1-CpG: 56/Downstream/37648
Upstream sequence
cttgtgtcttcctcacaaaaaagggagtaactctgaagtgataggtatgttaataagcttgattgtgatgatcacttcataatgtatacttaaaacatta
Downstream sequence
agttgtataccttaaatatatagaaatatttttatcaattatacctaaatgaagctttataaaaagacaaacaacaaaatggaaaaatgagaaaatgacc
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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