Basic Information
VIS ID
TVIS10005369
Fusion event
HBV-chr7 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1813
Orient
-
Integrated sequence
ACTGTTTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACC| |ATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACC
Host Sequence
Chromosome
chr7
Cytoband
q11.23
Reference genome
GRCh37/hg19
Start
74111036/74696704 (Hg38)
End
74111036/74696704 (Hg38)
Orient
+
Location type
Intron
Fragile sites / regions
FRA7J
Target gene
GTF2I ; LOC101926943
miRNAs that regulate target gene
hsa-let-7b-5p ; hsa-mir-21-5p ; hsa-mir-1229-3p ; hsa-mir-10a-3p ; hsa-mir-484 ; hsa-mir-23b-3p ; hsa-mir-99a-5p ; hsa-let-7e-5p ; hsa-let-7a-5p ; hsa-mir-335-3p ; hsa-mir-1305 ; hsa-mir-607 ; hsa-mir-3671 ; hsa-mir-580-5p ; hsa-mir-1252-3p ; hsa-mir-3646 ; hsa-mir-3121-3p
Nearest miRNA
hsa-mir-10525/Upstream/100678; hsa-mir-10399/Downstream/1218493;
Nearest TSS
ENST00000635602/Upstream/12047; ENST00000490431/Downstream/8473;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/37952, chr7-CpG: 124/Downstream/91285
Upstream sequence
tttgtatttttagtagggacaaggtttcactatgttggccaggctggtctcaaactcctgacctcaagagatctgcccgtcttggcctcccaaagtgctg
Downstream sequence
gactgatcttaaactcctgacctcaggcgatctgccctccttggcctcccaaagtgctgggattacaggcatgagccactgcacccggccTAATTCTCAA
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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