FN1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10005388
Fusion event
HBV-FN1 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1262
Orient
+
Integrated sequence
GGTCAGGTCTCTGCCAAGTGTTTGCTGACGCAACCCCCACTGGATGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCC| |GATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCAAAACTTATCGGGACTGACAACTCTGTTGTCCTCTCTCGGAAATAC
Host Sequence
Chromosome
chr2
Cytoband
q35
Reference genome
End
216299860/215435137 (Hg38)
Orient
+
Location type
Intron
Target gene
Nearest miRNA
hsa-mir-10b/Upstream/1676978; hsa-mir-1244-1/Downstream/2465376;
Upstream sequence
ATGCAAGGAACTTAAATATTCTTTTGGAGTAATAGTCAAAAAGGACAACTTTAAGCAGCTTTCTCAAAGCAAAAGGAGGGTGTGTCTTTGAAAAACGGAA
Downstream sequence
AGAATTCCAACCTCTGTTCTTGGTGAAGTATCCTGAGCGGCCCTAAAGAGGTCTGAACCAATTACATCTCTTCCAAGTTAGTTAGAAACAAGACAGCTAT
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
Curate