Basic Information
VIS ID
TVIS10005456
Fusion event
HBV-chr3 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
2136
Orient
-
Integrated sequence
AACATTGTTCACCTCACCATACAGCACTCAGGCAAGCTATTCTGTGTTGGGGTGAGTTGATGAATCTGGCCACCTGGGTGGGAAGTAATTTGGAAGACCC| |AGCATCCAGGGAATTAGTAGTCAGCTATGTCAATGTTAATATGGGCCTAAAAATCAGACAACTATTGTGGTTTCACATTTCCTGTCTTACTTTTGGAAGA
Host Sequence
Chromosome
chr3
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
96340950/96622106 (Hg38)
End
96340950/96622106 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/262067; hsa-mir-12124/Downstream/3342208;
Nearest TSS
ENST00000440867/Upstream/3870; ENST00000506569/Downstream/192475;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1683791, chr3-CpG: 49/Downstream/154667
Nearby gene
MTRNR2L12(-2232) ;
Upstream sequence
agccaaggctcaaatacaacaaaataaggaaatacaacaaaataaggaaacacaactagtaagtagctggaaagtgactcgatacaggtttgaatgactc
Downstream sequence
atataaaatatatacttatatatattttatatatatatTTCTCCCCCCCCCAAATTCTCAATCTGACTTTAAATAATTTCTTCTGGTGATTGTACTTCAG
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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