Basic Information
VIS ID
TVIS10005465
Fusion event
HBV-chr12 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1954
Orient
-
Integrated sequence
TCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTTGGAGCTTCTGTGGAGTTACTCTCTTTT| |TTGCCTTCTGACTTCTTTCCTTCTATTCGAGATCTCCTCGACACCGCCTCTGCTCTGTATCGGGAGGCCTTAGAGTCTCCGGAACATTGTTCACCTCACC
Host Sequence
Chromosome
chr12
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
16542992/16390058 (Hg38)
End
16542992/16390058 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1244-3/Upstream/3474140; hsa-let-7i/Downstream/1283241;
Nearest TSS
ENST00000382841/Upstream/7231; ENST00000541892/Downstream/177353;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/478458, chr12-CpG: 131/Downstream/2739333
Nearby gene
SUPT16HP1(+8817) ;
Upstream sequence
AATACAGACTGCAGCTCCATCCGTCAGAGGGTTGAAATTTCACACACGAAGGCTCATTTTGATATGTTCACATTTATGTGGCAAGCGCTCCAAAAGGGAG
Downstream sequence
GCCCTAAATACATCTTGTCAGAATAACTCCAGCAAAGACTGACATTTACACATTTCTCTGGTTAGGAAATGTAATAGAGGcaggggcatatacaggtttt
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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