Basic Information
VIS ID
TVIS10005484
Fusion event
HBV-chr20 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1822
Orient
-
Integrated sequence
TTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTT| |TTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAG
Host Sequence
Chromosome
chr20
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
11190492/11209844 (Hg38)
End
11190492/11209844 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA20B
Nearest miRNA
hsa-mir-103a-2/Upstream/560149; hsa-mir-1-1/Downstream/7260771;
Nearest TSS
ENST00000382410/Upstream/182084; ENST00000450368/Downstream/58991;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/534881, chr20-CpG: 37/Downstream/477030
Upstream sequence
ACAGTTGGGTAATAGATGGCTTTGGAACAATTAGCTGAAGAGGAGGATGATGATGTACTTTTATATATTTCAATTAGAATAACACTCCAGTCGCATTGTT
Downstream sequence
GAGATTGTTGTTTCTGGATTGCAGTTCCAACGTCATACTGAGTTTGCTCATTTTCATGAGCCAAGATGGGCTCTCTAGTCCTTGATTCCCTGGCTCATCT
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
Curate