ATP8A2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10005502
Fusion event
HBV-ATP8A2 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
2650
Orient
+
Integrated sequence
TTCATTTACAGGAGGACATTATTAATAGATGTCAACAATATGTGGGCCCTCTTACAGTTAATGAAAAAAGGAGATTAAAATTAATTATGCCTGCTAGGTT| |CTATCCTAACCTTACCAAATATTTGCCCTTGGATAAAGGCATTAAACCTTATTATCCTGAACATGCAGTTAATCATTACTTCAAAACTAGGCATTATTTA
Host Sequence
Chromosome
chr13
Cytoband
q12.13
Reference genome
GRCh37/hg19
Start
26389615/25815477 (Hg38)
End
26389615/25815477 (Hg38)
Orient
-
Location type
Intron
Target gene
ATP8A2
miRNAs that regulate target gene
hsa-mir-30a-5p ; hsa-mir-16-5p ; hsa-mir-675-5p ; hsa-mir-1271-5p ; hsa-mir-182-5p ; hsa-mir-196a-3p ; hsa-mir-2278 ; hsa-mir-29b-1-5p ; hsa-mir-3919 ; hsa-mir-3925-5p ; hsa-mir-4468 ; hsa-mir-5087 ; hsa-mir-6501-3p ; hsa-mir-96-5p ; hsa-mir-129-5p
Nearest miRNA
hsa-mir-2276/Upstream/1652973; hsa-mir-1267/Downstream/13848557;
Nearest TSS
ENST00000623511/Upstream/248344; ENST00000621997/Downstream/235554;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/346129, chr13-CpG: 49/Downstream/196672
Junction sequence
TT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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