CCDC102B _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10005590
Fusion event
HBV-CCDC102B integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1826
Orient
+
Integrated sequence
GGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTC| |ACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATT
Host Sequence
Chromosome
chr18
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
66639827/68972590 (Hg38)
End
66639827/68972590 (Hg38)
Orient
-
Location type
Intron
Target gene
CCDC102B
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-mir-1-2/Upstream/1890904; hsa-mir-548av/Downstream/3880731;
Nearest TSS
ENST00000575820/Upstream/70335; ENST00000579651/Downstream/239687;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/257252, chr18-CpG: 174/Downstream/427683
Junction sequence
TG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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