NUP153 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10005622
Fusion event
HBV-NUP153 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1818
Orient
-
Integrated sequence
TTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCA| |ACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTAT
Host Sequence
Chromosome
chr6
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
17676276/17676045 (Hg38)
End
17676276/17676045 (Hg38)
Orient
+
Location type
Intron
Target gene
NUP153
miRNAs that regulate target gene
hsa-mir-374b-5p ; hsa-mir-26b-5p ; hsa-mir-744-5p ; hsa-mir-106b-3p ; hsa-mir-330-3p ; hsa-mir-93-5p ; hsa-mir-23a-3p ; hsa-let-7b-5p ; hsa-mir-4696 ; hsa-mir-125a-3p ; hsa-mir-6888-5p ; hsa-mir-4524b-3p ; hsa-mir-552-3p ; hsa-mir-5680
Nearest miRNA
hsa-mir-3691/Upstream/1534421; hsa-mir-10398/Downstream/895739;
Nearest TSS
ENST00000381078/Upstream/75690; ENST00000606771/Downstream/30212;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/74879, chr6-CpG: 117/Downstream/30016
Upstream sequence
AATGTATTAATATGAGTTTTATAAGTTTAAGTTTTTACAATGAGCAAGTGTCATTTTTGTAACTAGAAAAAAGGTAATGTGatatatatatatatatata
Downstream sequence
AACCCATTCACTTTTTTGATGGTGTATTTTGTAATACAGAAAGTAACTTCTGCCTTATAGTCCTATCATTCTGAGACCATAAAAAATAAGTTTTACCCGT
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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