Home
Browse
Prime browse
Clustered VIS browse
Search
Curation
Gene
Target gene
All
Oncogene
Tumor suppressor gene
Nearby gene
All
Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
Download
Statistics
Help
VISDB
Viral Integration Site DataBase
Homepage
Prime VIS Browse Options
TVIS10005658
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10005658
Fusion event
HBV-TPPP integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
2558
Orient
-
Integrated sequence
TTGGACTCATAAGGTGGGAAACTTTACTGGGCTTTATTCTTCTACTGTACCTGTCTTTAATCCTGAGTGGCAAACTCCCTCCTTTCCTAACATTCATTTA| |CAGGAGGACATTATTAATAGATGTCAACAATATGTGGGCCCTCTTACAGTTAATGAAAAAAGGAGATTAAAATTAATTATGCCTGCTAGGTTCTATCCTA
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
673521/673406 (Hg38)
End
673521/673406 (Hg38)
Orient
+
Location type
Intron
Target gene
TPPP
miRNAs that regulate target gene
hsa-mir-34a-5p
;
hsa-mir-26b-5p
;
hsa-mir-190a-3p
;
hsa-mir-1277-5p
;
hsa-mir-5011-5p
;
hsa-mir-5589-3p
;
hsa-mir-92b-3p
;
hsa-mir-92a-3p
;
hsa-mir-367-3p
;
hsa-mir-363-3p
;
hsa-mir-32-5p
;
hsa-mir-25-3p
;
hsa-mir-513c-3p
;
hsa-mir-513a-3p
;
hsa-mir-3606-3p
;
hsa-mir-548c-3p
;
hsa-mir-410-3p
;
hsa-mir-4446-5p
;
hsa-mir-5006-3p
;
hsa-mir-4755-5p
;
hsa-mir-623
;
hsa-mir-6832-3p
;
hsa-mir-211-5p
;
hsa-mir-204-5p
;
hsa-mir-377-3p
;
hsa-mir-3681-3p
;
hsa-mir-216a-3p
;
hsa-mir-128-3p
;
hsa-mir-578
;
hsa-mir-526b-5p
;
hsa-mir-4635
;
hsa-mir-149-3p
;
hsa-mir-215-3p
;
hsa-mir-2467-3p
;
hsa-mir-2467-5p
;
hsa-mir-3186-3p
;
hsa-mir-4728-5p
;
hsa-mir-6773-3p
;
hsa-mir-6781-5p
;
hsa-mir-6785-5p
;
hsa-mir-6883-5p
;
hsa-mir-7112-5p
;
hsa-mir-760
Nearest miRNA
hsa-mir-10397/Downstream/389490;
Nearest TSS
ENST00000502646/Upstream/17951;
ENST00000607068/Downstream/2420;
Nearest CpG islands
None/Target,
chr5-CpG: 87/Upstream/4932
,
chr5-CpG: 26/Downstream/4292
Junction sequence
AGGGG
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
Sample Information
×
Sample name
RK115_T
Sample type
Tumor
Sample size
18mm
Age
68
Gender
Female
CpG Island Information
×
Download
Curate