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VISDB
Viral Integration Site DataBase
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TVIS10005691
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10005691
Fusion event
HBV-TXNL4B integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1783
Orient
+
Integrated sequence
CAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTG| |TAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCC
Host Sequence
Chromosome
chr16
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
72095190/72061291 (Hg38)
End
72095190/72061291 (Hg38)
Orient
+
Location type
Promoter
Target gene
TXNL4B
miRNAs that regulate target gene
hsa-mir-574-5p
;
hsa-mir-6803-5p
;
hsa-mir-6751-5p
;
hsa-mir-6867-5p
;
hsa-mir-4472
;
hsa-mir-4447
;
hsa-mir-3650
;
hsa-mir-4455
;
hsa-mir-6747-5p
;
hsa-mir-7110-5p
;
hsa-mir-6842-5p
;
hsa-mir-6752-5p
;
hsa-mir-6835-5p
;
hsa-mir-8064
;
hsa-mir-4643
;
hsa-mir-8485
;
hsa-mir-3622b-5p
;
hsa-mir-3689d
;
hsa-mir-4327
;
hsa-mir-4459
;
hsa-mir-4537
;
hsa-mir-455-3p
;
hsa-mir-4633-3p
;
hsa-mir-5197-5p
;
hsa-mir-6134
;
hsa-mir-6499-3p
;
hsa-mir-6500-5p
;
hsa-mir-6516-5p
;
hsa-mir-665
;
hsa-mir-6840-3p
;
hsa-mir-6851-5p
;
hsa-mir-6874-5p
;
hsa-mir-6880-5p
Nearest miRNA
hsa-mir-1225/Upstream/2030869; hsa-mir-11401/Downstream/4807645;
Nearest TSS
ENST00000527434/Upstream/5130;
ENST00000566168/Downstream/1933;
Nearest CpG islands
None/Target,
chr16-CpG: 29/Upstream/52302
,
chr16-CpG: 15/Downstream/31939
Upstream sequence
TCTTCCACCTTAGGGAATCATGCTCACTGATTGAGTGCCTATTGAATGCTAGGTCCCAGAAAGTTAactgttgtccttgttttacagacaaggaaacaga
Downstream sequence
gactcagagatggtaagtgagttgcttaaggttacatagctatgaaacagggaagcagaactttgaacccaggtctgtttgatacaaactcagaggtcct
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
Sample Information
×
Sample name
RK130_T
Sample type
Tumor
Sample size
43mm
Age
42
Gender
Male
CpG Island Information
×
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