SDCCAG8 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10005700
Fusion event
HBV-SDCCAG8 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1928
Orient
-
Integrated sequence
CTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTTG| |GAGCTTCTGTGGAGTTACTCTCTTTTTTGCCTTCTGACTTCTTTCCTTCTATTCGAGATCTCCTCGACACCGCCTCTGCTCTGTATCGGGAGGCCTTAGA
Host Sequence
Chromosome
chr1
Cytoband
q43
Reference genome
End
243556275/243392973 (Hg38)
Orient
-
Location type
Intron
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-101-1/Upstream/46718; hsa-mir-3124/Downstream/3808994;
Upstream sequence
AAACTGTTAACGGAGAATTAACTTCTTTGGCATGCTTTCATACTTATCTTCCAAATTAAAGAAAATGAAATGGGCAGAAACAGAGTGTAGATTACCTCCT
Downstream sequence
TTTTGTCAAAAATGGTGGGAATTTGAAAATTAATAATAAAAAAGGGAACAGATGCAGTAACATGCCAGAGGGAGATTAATGTGGAGAGTAAAATCTGTGA
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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