Basic Information
VIS ID
TVIS10005713
Fusion event
HBV-chr14 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1820
Orient
-
Integrated sequence
GTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAAC| |TTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAA
Host Sequence
Chromosome
chr14
Cytoband
q12
Reference genome
GRCh37/hg19
Start
27778537/27309331 (Hg38)
End
27778537/27309331 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-208a/Upstream/400606; hsa-mir-1185-1/Downstream/323874;
Nearest TSS
ENST00000550708/Upstream/436168; ENST00000555350/Downstream/303257;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/1104059, chr14-CpG: 203/Downstream/1456352
Upstream sequence
ttctggtggaagacttttatttggttctgtgaatacttattttgtttcctatgtatttctagcagtcatcattcattccatttatctagaattcctaagc
Downstream sequence
tacctgtattgggacagcaggaattaatggagcacaccagctttctatctttaaactaactttttgaattttaggcttccttatactttaagtgtgttga
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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