hsa-mir-4434 _LIHC.png
ABCC6 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10005719
Fusion event
HBV-ABCC6 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
2343
Orient
-
Integrated sequence
TTCTTGAGTATTTGGTGTCTTTTGGAGTGTGGATTCGCACTCCTCCCGCTTACAGACCACCAAATGCCCCTATCTTATCAACACTTCCGGAAACTACTGT| |TGTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATCT
Host Sequence
Chromosome
chr16
Cytoband
p13.11
Reference genome
End
16267145/16173288 (Hg38)
Orient
+
Location type
Exon
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-1225/Upstream/529916; hsa-mir-11401/Downstream/126871;
Upstream sequence
gagtATCACTGCCAAGTGCTACATTTGGTGGGAAGACTTGGGCCCCTGGAGGTGGCAGCAGTGGGTGGGGAGGGGTGGGTGAAGCTGGTGGTTACCCTGC
Downstream sequence
CGTATTGGATGCTGTCCTTTCCTGCTGGCCATCCTGCCCTGTCAGGGTCATCCAGAGGAACCTCTGTCTGGGCTTCTGAAGTGGTACGGTCCTTCTCAGG
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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