Basic Information
VIS ID
TVIS10005753
Fusion event
HBV-chrX integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1357
Orient
-
Integrated sequence
CTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCAAAACTTATCGGGACTGACAACTCTGTTGTCCTCTCTCGGA| |AATACACCTCCTTCCCATGGCTGCTCGGGTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCGCTGAATCCCGCGGACGA
Host Sequence
Chromosome
chrX
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
82865909/83610901 (Hg38)
End
82865909/83610901 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/4709652; hsa-mir-105-1/Downstream/614851;
Nearest TSS
ENST00000429181/Upstream/102608; ENST00000329312/Downstream/250225;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/100133, chrX-CpG: 95/Downstream/576487
Upstream sequence
ggtggccgaggcaggcggatcacctgaggtcaggtgttggagaccagcctggccaacatggcgaaaccctgtccctactaaaaatacaaaaattagccgg
Downstream sequence
cctaatagttttgtagtttaacccttatacttaggttgttgctttactttcagttaacctttgtgtatagagtgaggtgaggaactaactttattatgta
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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