MAST4 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10005873
Fusion event
HBV-MAST4 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1822
Orient
+
Integrated sequence
TTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTT| |TTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAG
Host Sequence
Chromosome
chr5
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
66120930/66825102 (Hg38)
End
66120930/66825102 (Hg38)
Orient
+
Location type
Intron
Target gene
MAST4
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-98-5p ; hsa-mir-26b-5p ; hsa-mir-324-3p
Nearest miRNA
hsa-mir-10397/Upstream/7121399; hsa-mir-103a-1/Downstream/5344365;
Nearest TSS
ENST00000502646/Upstream/36321; ENST00000470421/Downstream/3672;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/227391, chr5-CpG: 21/Downstream/178838
Upstream sequence
ACTTACCCTAAGAAGCCAAACCGTCCCTCTTTCTTCGTCATTTAAACATCTTCTGCCACTAATGttttccttttcatttatttattgagatagatctcgc
Downstream sequence
tatagactttttaattttaaaaacttttaaattctttcgcaatatcacttagcttaaaacatgcattatgtggctgtagcaaaatattgttttctttaag
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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