Basic Information
VIS ID
TVIS10005937
Fusion event
HBV-chr1 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1826
Orient
+
Integrated sequence
GGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTC| |ACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATT
Host Sequence
Chromosome
chr1
Cytoband
q41
Reference genome
GRCh37/hg19
Start
221715672/221542330 (Hg38)
End
221715672/221542330 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/1341711; hsa-mir-1182/Downstream/2714710;
Nearest TSS
ENST00000473358/Upstream/33771; ENST00000421147/Downstream/169486;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/646513, chr1-CpG: 128/Downstream/199802
Nearby gene
LOC100132179(+6921) ;
Upstream sequence
TTTTTACATTGACCATTAGAAATCTGAGTTGAATTTTTAAAAATTGTACTGACAATATTAATCTAGTAAGTTGATATGTTTACCACAATTTTTTCCTAAA
Downstream sequence
AATTTTCTAATTTCTGTTTTTCTTTTAACTGCTTTTTGTTATACCTATCTTTTGTTGAAAGCCACTTCAGACCTTGGAAGCAAATGGGATATTCTCTTTA
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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