AKR1C3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10005943
Fusion event
HBV-AKR1C3 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
2755
Orient
-
Integrated sequence
CTAACCTTACCAAATATTTGCCCTTGGATAAAGGCATTAAACCTTATTATCCTGAACATGCAGTTAATCATTACTTCAAAACTAGGCATTATTTACATAC| |TCTGTGGAAGGCTGGCATTCTATATAAGAGAGAAACTACACGCAGCGCTTCATTTTGTGGGTCACCATATTCTTGGGAACAAGAGCTACAGCATGGGAGG
Host Sequence
Chromosome
chr10
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
5114216/5072024 (Hg38)
End
5114216/5072024 (Hg38)
Orient
+
Location type
Intronic
Target gene
AKR1C3
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-98-5p
Nearest miRNA
hsa-mir-5699/Upstream/1080765; hsa-mir-107/Downstream/1080172;
Nearest TSS
ENST00000439456/Upstream/23212; ENST00000603312/Downstream/5614;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/245419, chr10-CpG: 54/Downstream/340444
Upstream sequence
agatcatagttcagttcagttcacgctggacctcttctctactgcgatgttatgttactgataaaacctgtcctcaccatgttaatcagtacccagcttt
Downstream sequence
ctttgtctttgacTTTAGCAATAGCAGAATTTGTTTTTTTTCTGGCTCTTATGATTTAATAGCTACAGACAGGTGGGAATGAAGACCAGCCTATGTGACA
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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