AQP11 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10005951
Fusion event
HBV-AQP11 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1850
Orient
-
Integrated sequence
GATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTT| |CATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTTGGAGCTTCTGTGGAGTTACTCTC
Host Sequence
Chromosome
chr11
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
77320311/77609266 (Hg38)
End
77320311/77609266 (Hg38)
Orient
-
Location type
Intron
Target gene
AQP11
miRNAs that regulate target gene
hsa-mir-375
Nearest miRNA
hsa-mir-10392/Upstream/2274080; hsa-let-7a-2/Downstream/1792756;
Nearest TSS
ENST00000527297/Upstream/19631; ENST00000531855/Downstream/3775;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/18920, chr11-CpG: 39/Downstream/28112
Junction sequence
TC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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