Basic Information
VIS ID
TVIS10005958
Fusion event
HBV-chr14 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
2162
Orient
-
Integrated sequence
CTCAGGCAAGCTATTCTGTGTTGGGGTGAGTTGATGAATCTGGCCACCTGGGTGGGAAGTAATTTGGAAGACCCAGCATCCAGGGAATTAGTAGTCAGCT| |ATGTCAATGTTAATATGGGCCTAAAAATCAGACAACTATTGTGGTTTCACATTTCCTGTCTTACTTTTGGAAGAGAAACTGTTCTTGAGTATTTGGTGTC
Host Sequence
Chromosome
chr14
Cytoband
q21.1
Reference genome
End
41786429/41317226 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-208a/Upstream/4364835; hsa-mir-1185-1/Downstream/6443769;
Upstream sequence
CATAATAATAAGGGATAATTGTTTTTTATGCTAAATTTTACTGTTTTATATCTTGGAGATTACTAATTTTTGAAACTTAAAATACCTAAAATTTAATTAT
Downstream sequence
GATTAACATTTCATAAGCCGTGGACCTGATTGAAAGTGATCTCTTGACTGTTTCATGGAATGACTAAATATTGTATTCCCTGACTGACAAGTTTTGTAAT
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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