ZNF385B _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10005976
Fusion event
HBV-ZNF385B integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1838
Orient
-
Integrated sequence
GTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAA| |TCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTTGGAGCTTCTGT
Host Sequence
Chromosome
chr2
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
180690279/179825552 (Hg38)
End
180690279/179825552 (Hg38)
Orient
+
Location type
Intron
Fragile sites / regions
FRA2G
Target gene
ZNF385B
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p
Nearest miRNA
hsa-mir-10b/Upstream/2511670; hsa-mir-1244-1/Downstream/35284;
Nearest TSS
ENST00000437798/Upstream/22881; ENST00000629145/Downstream/35953;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/560616, chr2-CpG: 55/Downstream/35593
Upstream sequence
GTCTAAAATGTGTTACTACAGAAACACAATTCTTCTCCTTCTAAAGAATAAAGATTAACAAAATAACCACCCCCCAGTATTCTAACAGTTTAAAGGCAAG
Downstream sequence
ATTTAAAAGCATCTCATTTCCTCTTTCCCAAATTACTTGTAAGGTTATCTTGAAGCTCAGATTAGTTAGCTGTGCCTAGGCTTTATCAGTTAAGGAGTAA
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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