Basic Information
VIS ID
TVIS10005999
Fusion event
HBV-chr4 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1752
Orient
+
Integrated sequence
CATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGA| |TTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCA
Host Sequence
Chromosome
chr4
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
34898018/34896396 (Hg38)
End
34898018/34896396 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA4D
Nearest miRNA
hsa-mir-12113/Upstream/6076728; hsa-mir-1243/Downstream/1529970;
Nearest TSS
ENST00000502981/Upstream/227630; ENST00000502245/Downstream/1149638;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/4173176, chr4-CpG: 100/Downstream/1347613
Nearby gene
LOC107986272(+6214) ;
Upstream sequence
CTTGAAAGAAAGAAAGGCAGTTTGAAGTATGGAGGCATCTTGAAATGTTAGCAAAAGAAAACACCCCTAAAAAGTTTAAAGGCCTAACTAAAGTTTGTTT
Downstream sequence
ttgcctttccccatccatccccctggtgaccaacattctactccctacttatagaagttgactttttaaagttccacatataattgagaccatgtggtat
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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