Basic Information
VIS ID
TVIS10006011
Fusion event
HBV-chr6 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1821
Orient
-
Integrated sequence
TTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACT| |TTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAA
Host Sequence
Chromosome
chr6
Cytoband
q25.2
Reference genome
End
155035623/154714489 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/3611713; hsa-mir-1202/Downstream/138871;
Nearby gene
LOC646274(-4444) ;
Upstream sequence
aggtcaggagattgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattaattagccggacatggtggcgcctgtagtcc
Downstream sequence
tggtatcttcagaaagtaatgaggattaggtaaggtcatcagggtgagggccccatgatgcaactgatggctttataagaagaggaagcaatggccagcc
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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