Basic Information
VIS ID
TVIS10006025
Fusion event
HBV-LOC110806263 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
2609
Orient
-
Integrated sequence
TGTCTTTAATCCTGAGTGGCAAACTCCCTCCTTTCCTAACATTCATTTACAGGAGGACATTATTAATAGATGTCAACAATATGTGGGCCCTCTTACAGTT| |AATGAAAAAAGGAGATTAAAATTAATTATGCCTGCTAGGTTCTATCCTAACCTTACCAAATATTTGCCCTTGGATAAAGGCATTAAACCTTATTATCCTG
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
End
1298126/1298011 (Hg38)
Orient
-
Location type
Promoter
Target gene
Nearest miRNA
hsa-mir-4635/Upstream/235037; hsa-mir-10397/Downstream/11299;
Nearest CpG islands
Junction sequence
G
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
Curate