Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006076
Fusion event
HBV-HS1BP3 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
2300
Orient
-
Integrated sequence
TTGTGGTTTCACATTTCCTGTCTTACTTTTGGAAGAGAAACTGTTCTTGAGTATTTGGTGTCTTTTGGAGTGTGGATTCGCACTCCTCCCGCTTACAGAC| |CACCAAATGCCCCTATCTTATCAACACTTCCGGAAACTACTGTTGTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAG
Host Sequence
Chromosome
chr2
Cytoband
p24.1
Reference genome
Start
End
20850673/20650913 (Hg38)
Orient
+
Location type
Intron
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-3125/Upstream/1302408; hsa-mir-10b/Downstream/4677727;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/202686, chr2-CpG: 56/Downstream/39
Junction sequence
CGG
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).