Basic Information
VIS ID
TVIS10006083
Fusion event
HBV-chr21 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1804
Orient
+
Integrated sequence
ACTTCAAAGACTGTTTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTC| |ACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGG
Host Sequence
Chromosome
chr21
Cytoband
q22.12
Reference genome
GRCh37/hg19
Start
36530573/35158276 (Hg38)
End
36530573/35158276 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7c/Upstream/1607548; hsa-mir-3197/Downstream/562439;
Nearest TSS
ENST00000624081/Upstream/21638; ENST00000457157/Downstream/307053;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/131314, chr21-CpG: 42/Downstream/728617
Upstream sequence
ggcccactgcagcacttcatttgctgtgaagtgagttccttgatcagaagcagttttttatggaataccatgatggtggataaggcaattctttaagtcc
Downstream sequence
acggatggtagttttggccagaagcattgcatgcagggaagacaaatctgtatctatgccatctattccagtaagaaaaaacactacttcttccatgatg
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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