Basic Information
VIS ID
TVIS10006089
Fusion event
HBV-chr5 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1982
Orient
-
Integrated sequence
CTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTTGGAGCTTCTGTGGAGTTACTCTCTTTTTTGCCTTCTGACTTCTTTCCTTCTATTC| |GAGATCTCCTCGACACCGCCTCTGCTCTGTATCGGGAGGCCTTAGAGTCTCCGGAACATTGTTCACCTCACCATACAGCACTCAGGCAAGCTATTCTGTG
Host Sequence
Chromosome
chr5
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
132299939/132964247 (Hg38)
End
132299939/132964247 (Hg38)
Orient
-
Location type
Promoter
Fragile sites / regions
FRA5C
Nearest miRNA
hsa-mir-10397/Upstream/598648; hsa-mir-103a-1/Downstream/463349;
Nearest TSS
ENST00000502646/Upstream/477; ENST00000504328/Downstream/62287;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/199, chr5-CpG: 60/Downstream/61884
Nearby gene
AFF4(-585) ;
Upstream sequence
CAGGTATTTTAATCTTACATGGATGAGCATGGGAATGTCGGAATAAGGAATGCCTTAAAACTATTTTCTGAATGTATATTTTATTTCCTTTGAAAATGGT
Downstream sequence
tgttgtcgcccaggctggagtacaatggcgggatctcggctcactgcaacctccgcctcccgagttcaagcgattctagtacctcagcctccggagtagc
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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