hsa-mir-4659a-3p _LIHC.png
hsa-mir-6780a-3p _LIHC.png
GRIK3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006103
Fusion event
HBV-GRIK3 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
3015
Orient
-
Integrated sequence
ATTCTTTCCCGATCACCAGTTGGACCCTGCGTTCGGAGCCAACTCAAACAATCCAGATTGGGACTTCAACCCCAACAAGGATCACTGGCCAGAGGCAAAT| |CAGGTAGGAGCGGGAGCATTCGGGCCAGGGTTCACCCCACCACACGGCGGTCTTTTGGGGTGGAGCCCTCAGGCTCAGGGCATATTGACAACAGTGCCAG
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
End
37368357/36902756 (Hg38)
Orient
-
Location type
Intron
Target gene
Nearest miRNA
hsa-mir-12136/Upstream/2233062; hsa-mir-101-1/Downstream/258807;
Upstream sequence
taataccaaaggcacgacccatgaaagaaataattgataagctggactacattaaaattaaaattttctgctctgcaaaagacacagtaaagagaatgaa
Downstream sequence
aaatgaagccactgactgggacatatcttatgatggactacttttttttttgaaacagggtcttgctctgttgcccaggctggtgtgcagtggtacaacc
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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