SLC41A2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006120
Fusion event
HBV-SLC41A2 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1931
Orient
-
Integrated sequence
TGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTTGGAG| |CTTCTGTGGAGTTACTCTCTTTTTTGCCTTCTGACTTCTTTCCTTCTATTCGAGATCTCCTCGACACCGCCTCTGCTCTGTATCGGGAGGCCTTAGAGTC
Host Sequence
Chromosome
chr12
Cytoband
q23.3
Reference genome
End
105312743/104918965 (Hg38)
Orient
-
Location type
Intron
Target gene
Nearest miRNA
hsa-let-7i/Upstream/327249; hsa-mir-1178/Downstream/3716845;
Junction sequence
AA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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