Basic Information
VIS ID
TVIS10006149
Fusion event
HBV-LINC02112 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
817
Orient
-
Integrated sequence
CACTGTTTGGCTTTCAGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGTACAACATCTTGAGTCCCTTTTTACCTCTATTACCAATTTTCTTTTGT| |CTTTGGGTATACATTTGAACCCTAATAAAACCAAACGTTGGGGCTACTCCCTTAACTTCATGGGATATGTAATTGGAAGTTGGGGTACTTTACCACAGGA
Host Sequence
Chromosome
chr5
Cytoband
p15.31
Reference genome
GRCh37/hg19
Start
9738731/9738619 (Hg38)
End
9738731/9738619 (Hg38)
Orient
+
Location type
Intron
Target gene
LINC02112
Nearest miRNA
hsa-mir-4277/Upstream/684724; hsa-mir-10397/Downstream/663745;
Nearest TSS
ENST00000502646/Upstream/26241; ENST00000508097/Downstream/115758;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/192016, chr5-CpG: 103/Downstream/511029
Upstream sequence
acagtgcctcacacagtataggtgctcaatgagtatttgatgaataaatCTCTACTTCCTACATAATAACCAGTCTGGTCATACCGATAGACTTTATACA
Downstream sequence
GGTGATCAACCTGCTGATTTATGAACCAATTCATGCTACGGTAGTGATGGGGAATAGCAGTTACCACACTATCTTTTGTTATACCAACTTTGCCTTGACA
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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