Fusion event
HBV-SEMA3C integration
Detection method
PCR and Ultra-deep sequencing
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Integrated sequence
TCCCGATCACCAGTTGGACCCTGCGTTCGGAGCCAACTCAAACAATCCAGATTGGGACTTCAACCCCAACAAGGATCACTGGCCAGAGGCAAATCAGGTA| |GGAGCGGGAGCATTCGGGCCAGGGTTCACCCCACCACACGGCGGTCTTTTGGGGTGGAGCCCTCAGGCTCAGGGCATATTGACAACAGTGCCAGCAGCGC
End
80512240/80882924 (Hg38)
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-10525/Upstream/4967655; hsa-mir-10399/Downstream/11321091;
Upstream sequence
cttgtagagtttctgccaagagatccactgttagtctgatgggtttccctttgtaggtaacctgacatttctctctgtctgcccttaacattttttcctt
Downstream sequence
TTACCTAAACCCTCTTATATaacaacaacaacaacaacaacaacaaACTAAAGGTAAATACACCTGAAAGATACAAAAGAGGATGCCATGAGATACACCT
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).