SEMA3C _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006195
Fusion event
HBV-SEMA3C integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
3021
Orient
+
Integrated sequence
TCCCGATCACCAGTTGGACCCTGCGTTCGGAGCCAACTCAAACAATCCAGATTGGGACTTCAACCCCAACAAGGATCACTGGCCAGAGGCAAATCAGGTA| |GGAGCGGGAGCATTCGGGCCAGGGTTCACCCCACCACACGGCGGTCTTTTGGGGTGGAGCCCTCAGGCTCAGGGCATATTGACAACAGTGCCAGCAGCGC
Host Sequence
Chromosome
chr7
Cytoband
q21.11
Reference genome
End
80512240/80882924 (Hg38)
Orient
-
Location type
Intron
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-10525/Upstream/4967655; hsa-mir-10399/Downstream/11321091;
Upstream sequence
cttgtagagtttctgccaagagatccactgttagtctgatgggtttccctttgtaggtaacctgacatttctctctgtctgcccttaacattttttcctt
Downstream sequence
TTACCTAAACCCTCTTATATaacaacaacaacaacaacaacaacaaACTAAAGGTAAATACACCTGAAAGATACAAAAGAGGATGCCATGAGATACACCT
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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