SEMA3D _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006198
Fusion event
HBV-SEMA3D integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1791
Orient
+
Integrated sequence
GACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATA| |AATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGG
Host Sequence
Chromosome
chr7
Cytoband
q21.11
Reference genome
End
84643973/85014657 (Hg38)
Orient
+
Location type
Intron
Target gene
Nearest miRNA
hsa-mir-10525/Upstream/9099388; hsa-mir-10399/Downstream/7189358;
Upstream sequence
AGGAGCTCATGCTGTCATCCCCTCTGTGTCTCACCTACTTGTGCTGCAAGAGACCTGGATCCTGTTTATCTATCCACCCTCACCCCCACCCAAACAATTG
Downstream sequence
GTACAATCatatatatttatatattatttGCAAAACAGTGGGCATCAGTATATACATATTTAGAAATAAGAAATAAGGAAGGAACAATTATAAAAAAGGC
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
Curate