Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006217
Fusion event
HBV-AGBL4 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1125
Orient
+
Integrated sequence
TTTTACACAATGTGGCTATCCTGCCTTGATGCCTTTATATGCATGTATACAATCTAAGCAGGCTTTCACTTTCTCGCCAACTTACAAGGCCTTTCTGTGT| |AAACAATATCTGCACCTTTACCCCGTTGCCCGGCAACGGTCAGGTCTCTGCCAAGTGTTTGCTGACGCAACCCCCACTGGATGGGGCTTGGCCATAGGCC
Host Sequence
Chromosome
chr1
Cytoband
p33
Reference genome
Start
End
49996775/49531103 (Hg38)
Orient
-
Location type
Intron
Target gene
Nearest miRNA
hsa-mir-12136/Upstream/4985551; hsa-mir-101-1/Downstream/1528734;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/631862, chr1-CpG: 34/Downstream/492642
Junction sequence
CA
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).