Basic Information
VIS ID
TVIS10006234
Fusion event
HBV-chr5 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1313
Orient
-
Integrated sequence
TGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGG| |AGCAAAACTTATCGGGACTGACAACTCTGTTGTCCTCTCTCGGAAATACACCTCCTTCCCATGGCTGCTCGGGTGTGCTGCCAACTGGATCCTGCGCGGG
Host Sequence
Chromosome
chr5
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
125133027/125797334 (Hg38)
End
125133027/125797334 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/6642618; hsa-mir-103a-1/Downstream/3300354;
Nearest TSS
ENST00000502646/Upstream/304073; ENST00000507428/Downstream/382243;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/1145279, chr5-CpG: 30/Downstream/626021
Upstream sequence
ccttttagtgaaggtaatttcttctggtggcatgatttaatttattggtttttatttttggtgtatctgttatatgtttttttatttgaggttaccatga
Downstream sequence
AGATTCTTTAGTCAATTTACTTATTTCTTGGTTTCTCAGTTCCTGGCTAGCTTGCAAAGAATTCAGggtgagcaagtatatgaaagcctacctcaaaagg
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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