Basic Information
VIS ID
TVIS10006238
Fusion event
HBV-LINC01517 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1828
Orient
-
Integrated sequence
ACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCAC| |CTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTTG
Host Sequence
Chromosome
chr10
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
29075806/28786877 (Hg38)
End
29075806/28786877 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC01517
Nearest miRNA
hsa-mir-1265/Upstream/497527; hsa-mir-107/Downstream/758127;
Nearest TSS
ENST00000439456/Upstream/43132; ENST00000375500/Downstream/8499;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/64353, chr10-CpG: 27/Downstream/138245
Junction sequence
G
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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