C7orf50 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006259
Fusion event
HBV-C7orf50 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1599
Orient
+
Integrated sequence
TCTGCCGTTCCGGCCGACCACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTG| |CACGTCGCATGGAGACCACCGTGAACGCCCACCAGGTCTTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGA
Host Sequence
Chromosome
chr7
Cytoband
p22.3
Reference genome
End
1062386/1022750 (Hg38)
Orient
-
Location type
Intron
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-10399/Downstream/183;
Nearest CpG islands
Upstream sequence
AATGGGAAATTAAGAGTGTTATTCTGACCTCTAGGGTAGAGAATGGGACCTCTGCTCAGCTTTAAGTGAGGAGCAAGACAGAATAGTGATGGTGAGCCCT
Downstream sequence
CAACCGTCCTCCCTCCCCAGTTACTTCCTCCCTAGGACACCAGTGGAACATCCCATGCTCTCCCCCTTCCATGTTGATACCGAATAAAACACACTGCATC
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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