Basic Information
VIS ID
TVIS10006290
Fusion event
HBV-chr2 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1718
Orient
+
Integrated sequence
CGTGAACGCCCACCAGGTCTTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGT| |TTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCA
Host Sequence
Chromosome
chr2
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
156058332/155201820 (Hg38)
End
156058332/155201820 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-128-1/Upstream/3833409; hsa-mir-10b/Downstream/3985015;
Nearest TSS
ENST00000437798/Upstream/233817; ENST00000416888/Downstream/822756;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/502263, chr2-CpG: 82/Downstream/1117919
Nearby gene
LOC107985952(+6342) ;
Upstream sequence
GATAAAATTCGTTTGTGATTATGgtttgacaccagagcaattagtctgacatttctatttctcaatttcttcacctgtaaaatggaatccattttatttg
Downstream sequence
aaaagttatttttagatatggggcaatacgcttaatataatagcaatatgcaatatagagtaggctcaaaaattagttgttttaatatATTTTTATTATT
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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