Fusion event
HBV-chr4 integration
Detection method
PCR and Ultra-deep sequencing
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Integrated sequence
GTTTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATG| |CAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGT
End
180475271/179554118 (Hg38)
Nearest miRNA
hsa-mir-12113/Upstream/5130254; hsa-mir-1305/Downstream/2615175;
Upstream sequence
AGGAAGAAGAAAGGATATCATTCTGACCAGAGGGGTGAAAAACAACCTGCATCTGATCCTGAGGCATAATACTATTAACACAATTCTTTTATGTTTCAGT
Downstream sequence
atctctcttgcttttccccacaCCAGGTCACCTACTATTTATCACCGGATGGTTTTTAATACCTATCAATGACTTAGAGATGTTTTTCCCTCTAATTTCA
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).