Basic Information
VIS ID
TVIS10006304
Fusion event
HBV-chr4 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1816
Orient
+
Integrated sequence
GTTTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATG| |CAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGT
Host Sequence
Chromosome
chr4
Cytoband
q34.3
Reference genome
End
180475271/179554118 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/5130254; hsa-mir-1305/Downstream/2615175;
Upstream sequence
AGGAAGAAGAAAGGATATCATTCTGACCAGAGGGGTGAAAAACAACCTGCATCTGATCCTGAGGCATAATACTATTAACACAATTCTTTTATGTTTCAGT
Downstream sequence
atctctcttgcttttccccacaCCAGGTCACCTACTATTTATCACCGGATGGTTTTTAATACCTATCAATGACTTAGAGATGTTTTTCCCTCTAATTTCA
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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