Basic Information
VIS ID
TVIS10006314
Fusion event
HBV-LINC01592 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
2250
Orient
+
Integrated sequence
TAGTAGTCAGCTATGTCAATGTTAATATGGGCCTAAAAATCAGACAACTATTGTGGTTTCACATTTCCTGTCTTACTTTTGGAAGAGAAACTGTTCTTGA| |GTATTTGGTGTCTTTTGGAGTGTGGATTCGCACTCCTCCCGCTTACAGACCACCAAATGCCCCTATCTTATCAACACTTCCGGAAACTACTGTTGTTAGA
Host Sequence
Chromosome
chr8
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
69851229/68938994 (Hg38)
End
69851229/68938994 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC01592
Nearest miRNA
hsa-mir-124-1/Upstream/4559737; hsa-mir-10400/Downstream/5609549;
Nearest TSS
ENST00000518652/Upstream/86231; ENST00000528286/Downstream/20655;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/607426, chr8-CpG: 224/Downstream/892869
Upstream sequence
gcgtggtggcgtgggcctataatcccagctactcagggggctgaggcaggagaatcgcttgaacccaggaggcagatgttgcagtgagccaagactgagc
Downstream sequence
TTTTAAGGATTTCTTAGATAACATTTTGCAAGATCCTTTGTGTAGGGGAGACTATTTTTACATTTTAGTTGAAAAAAAAGTAGACATTTTTAAAAGACCA
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
Curate