CCDC150 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006321
Fusion event
HBV-CCDC150 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
27453547
Virus Sequence
Virus name
HBV
Reference genome
V01460.1
Start
1802
Integrated sequence
GAGTCCCAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCT| |AGCAGCCATGGAAACGATGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTA
Host Sequence
Chromosome
chr2
Cytoband
q33.1
Reference genome
GRCh38
Start
196661734 (Hg38)
End
196661734 (Hg38)
Location type
Intron
Target gene
CCDC150
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p
Nearest miRNA
hsa-mir-10b/Upstream/7528623; hsa-mir-1244-1/Downstream/10121500;
Nearest TSS
ENST00000437798/Upstream/4989; ENST00000497159/Downstream/14435;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/21900, chr2-CpG: 31/Downstream/137754
Downstream sequence
ATTGCCCTTAATAGTACTT
Junction sequence
GCTGTAGGCATAAATTGGTCTATTGCCCTTAATAGTACTT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
Curate