Basic Information
VIS ID
TVIS10006322
Fusion event
HBV-chr2 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1805
Integrated sequence
TCCCAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGC| |AGCCATGGAAACGATGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGA
Host Sequence
Chromosome
chr2
Cytoband
q32.1
Reference genome
End
187112119 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10b/Upstream/2733075; hsa-mir-1244-1/Downstream/1185373;
Nearby gene
ZSWIM2(-262949) ; CALCRL(+229843) ;
Upstream sequence
GCAGTTATGTATATGTTTCT
Junction sequence
GCAGTTATGTATATGTTTCTCGCAGACCAATTTATGCCTA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
Curate