Basic Information
VIS ID
TVIS10006329
Fusion event
HBV-chrX integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
27453547
Virus Sequence
Virus name
HBV
Reference genome
V01460.1
Start
1777
Integrated sequence
ACGGCAGACGGAGAAGGGGACGAGAGAGTCCCAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCG| |CAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGAC
Host Sequence
Chromosome
chrX
Cytoband
q21.31
Reference genome
GRCh38
Start
89717084 (Hg38)
End
89717084 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/3813377; hsa-mir-105-1/Downstream/5346057;
Nearest TSS
ENST00000429181/Upstream/293346; ENST00000283891/Downstream/204798;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/3568211, chrX-CpG: 43/Downstream/1717519
Nearby gene
CPXCR1(-962300) ; TGIF2LX(+204856) ;
Upstream sequence
AGCCATATTTCTGTTCTT
Junction sequence
AGCCATATTTCTGTTCTTTAGTACAAAGACCTTTAATC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
Curate