Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006336
Fusion event
HBV-ARMC9 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1808
Integrated sequence
CAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGC| |CATGGAAACGATGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGTT
Host Sequence
Chromosome
chr2
Cytoband
q37.1
Reference genome
Start
End
231222422 (Hg38)
Location type
Intron
Target gene
Nearest miRNA
hsa-mir-10b/Upstream/3750235; hsa-mir-1244-1/Downstream/140286;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/23520, chr2-CpG: 18/Downstream/27385
Downstream sequence
AGCCTAATAAGGTTCCT
Junction sequence
GCATAAATTGGTCTGTTCACAGCCTAATAAGGTTCCT
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.