Basic Information
VIS ID
TVIS10006342
Fusion event
HBV-chr4 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
27453547
Virus Sequence
Virus name
HBV
Reference genome
V01460.1
Start
1803
Integrated sequence
AGTCCCAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTA| |GCAGCCATGGAAACGATGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAG
Host Sequence
Chromosome
chr4
Cytoband
q25
Reference genome
GRCh38
Start
111109946 (Hg38)
End
111109946 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/249299; hsa-mir-1243/Downstream/1537928;
Nearest TSS
ENST00000502981/Upstream/315543; ENST00000510034/Downstream/530549;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/470294, chr4-CpG: 120/Downstream/1035368
Nearby gene
PITX2(-467823) ;
Nearest cancer related gene
PITX2(OG, -467823) ;
Upstream sequence
ATATATATATATTAAAATT
Junction sequence
ATATATATATATTAAAATTAACAGACCAATTTATGCCTACA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
Curate