VISDB Viral Integration Site DataBase

VIS ID

TVIS10006356

Fusion event

HBV-CDH2 integration

Validated

Yes

Detection method

invPCR +Sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Perfect

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1920

Integrated sequence

GTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGTTCCGCAGTATGGA| |TCGGCAGAGGAGCCGAAAAGGTTCCACGCATGCGCTGATGGCCCATGACCAAGCCCCAGCCAGTGGGGGTTGCGTCAGCAAACACTTGGCACAGACCTGG

Chromosome

chr18

Cytoband

q12.1

Reference genome

Start

End

28103851 (Hg38)

Location type

Intron

Target gene

miRNAs that regulate target gene

hsa-mir-204-5p ; hsa-mir-194-5p ; hsa-mir-145-5p ; hsa-mir-155-5p ; hsa-mir-138-5p ; hsa-mir-124-3p ; hsa-mir-1-3p ; hsa-mir-30a-5p ; hsa-mir-27b-5p ; hsa-mir-615-3p ; hsa-mir-218-5p ; hsa-mir-199a-5p ; hsa-mir-412-3p ; hsa-mir-411-5p ; hsa-mir-216b-3p ; hsa-mir-1244 ; hsa-mir-603 ; hsa-mir-8485 ; hsa-mir-338-3p ; hsa-mir-506-3p ; hsa-mir-153-5p ; hsa-mir-208a-5p ; hsa-mir-208b-5p ; hsa-mir-587

Nearest miRNA

hsa-mir-1-2/Upstream/1512316; hsa-mir-122/Downstream/2195059;

Nearest TSS

Nearest CpG islands

None/Target, chr18-CpG: 67/Upstream/918308, chr18-CpG: 257/Downstream/71599

Upstream sequence

TACTTTTATATGGCTGCA

Junction sequence