Basic Information
VIS ID
TVIS10006358
Fusion event
HBV-chr5 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
27453547
Virus Sequence
Virus name
HBV
Reference genome
V01460.1
Start
1770
Integrated sequence
GGTCGGAACGGCAGACGGAGAAGGGGACGAGAGAGTCCCAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACG| |TCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGC
Host Sequence
Chromosome
chr5
Cytoband
p15.31
Reference genome
GRCh38
Start
9591420 (Hg38)
End
9591420 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-4277/Upstream/537525; hsa-mir-10397/Downstream/810944;
Nearest TSS
ENST00000502646/Upstream/45130; ENST00000508097/Downstream/38935;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/44817, chr5-CpG: 103/Downstream/658228
Nearby gene
SNHG18(-41123) ; TAS2R1(+37576) ;
Upstream sequence
ACATTAAAATCAAGAACTT
Junction sequence
ACATTAAAATCAAGAACTTAAGATCATTAACCTAATCTC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
Curate