FGF12 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006361
Fusion event
HBV-FGF12 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1829
Integrated sequence
GTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATGTATATTTG| |CGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGTTCCGCAGTATGGATCGGCAGAG
Host Sequence
Chromosome
chr3
Cytoband
q28
Reference genome
End
192177304 (Hg38)
Location type
Intron
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-let-7g/Upstream/2347295; hsa-mir-3137/Downstream/2957202;
Downstream sequence
AGGCCTATAAAATTAT
Junction sequence
AGGCCTATAAAATTAT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
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